_principal-components-analysis-of-protein-and-nucleotide-alignments-in-jalview.jpg "Principal components analysis of protein and nucleotide alignments in Jalview from msa calculation Video Screenshot Preview")
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⏲ Duration: 1 min 45 sec
✓ Published: 14-Mar-2018
✓ Published: 14-Mar-2018
Description:
Jalview is a free-to-use sequence alignment and analysis visualisation software linking genomic variants in DNA, protein alignments and 3D structure (http://www.jalview.org/). In this tutorial, we learn how to run principal components analysis in Jalview.nnPrincipal Components Analysis is an alternative to cluster analysis as a way to visualise groups of similar sequences. Similar sequences lie close to each other in 3D space. By default, the protein principal components analysis uses BLOSUM 62
Jalview is a free-to-use sequence alignment and analysis visualisation software linking genomic variants in DNA, protein alignments and 3D structure (http://www.jalview.org/). In this tutorial, we learn how to run principal components analysis in Jalview.nnPrincipal Components Analysis is an alternative to cluster analysis as a way to visualise groups of similar sequences. Similar sequences lie close to each other in 3D space. By default, the protein principal components analysis uses BLOSUM 62
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